The FANTOM web resource describes functional annotations and tools for exploring mammalian noncoding genomes, including long noncoding RNA data.
Dataset
FILER: Functional genomics repository
FILER indexes human functional genomics data and supports searches by tissue, cell type, biosample, assay, and data type.
About FILER: Functional genomics repository
FILER (FunctIonaL gEnomics Repository) is a human functional genomics database developed by NIAGADS. It brings together data from more than 20 sources into harmonized, indexed formats with consistent annotation and preprocessing. The collection includes 70,396 genomic tracks, 49.2 billion genomic intervals, and 1.87 TB of compressed files.
You can search by tissue and cell type, biosample type, assay, data type, data collection, or genomic coordinates. You can also browse datasets and annotations, upload and analyze your own data, and view summaries by data source, tissue and cell type, genomic feature type, and assay. A Deploy option allows installation on a local server or cloud computing instance.
FILER suits researchers working with human genetic and genomic data who need reproducible methods and integration with high-throughput analysis workflows. External users may freely download, analyze, and publish results based on FILER data with citation of FILER and the original data sources.
Key features
- Search by tissue, cell type, biosample, assay, and data type
- Search by genomic coordinates
- Browse functional genomics datasets and annotations
- Upload and analyze your own data
- Deploy on local server or cloud computing instance
- Harmonized data in uniform, consistent formats
Best for: Researchers working with human functional genomics data who need searchable, harmonized datasets.
Good for
- Freely download, analyze and publish results
- Data from more than 20 sources in one place
- Uniform, consistent formats for reproducible research
FILER: Functional genomics repository at a glance
- Official website
- tf.lisanwanglab.org/FILER
- Category
- Research & Data › Open Data & Datasets
- Type
- Dataset
- Pricing
- Free
- Platforms
- Web
- Language
- English
- Last checked
- Oct 5, 2026 · Online when checked
- Listed
- Oct 5, 2026
Similar data sources
Other listings in Open Data & Datasets with the most in common.
SWATHAtlas helps researchers plan DIA and SWATH experiments and provides access to assay libraries and related resources.
Dataset
The Hymenoptera Genome Database supports insect genomics research with tools for data mining, sequence search, genome browsing, annotation, and downloads.
Dataset
Explore craniofacial research data on FaceBase, including genomic, imaging, and phenotypic datasets.
Dataset
The Allen Institute for Brain Science maps brain cells and shares research resources about brain structure and function.
Dataset
NEMAR supports finding, visualizing, analyzing, and downloading human EEG, MEG, iEEG, and EMG datasets.
Dataset
Popular in Open Data & Datasets
Well-known listings from the same topic.
data.worlddata.worldNASA APIapi.nasa.govCosmoSimcosmosim.orgdata.meudon.frdata.meudon.frESS-DIVEess-dive.lbl.govState of Hawaiidata.hawaii.gov
FILER: Functional genomics repository FAQ
What is FILER?
FILER is a functional genomics database developed by NIAGADS that indexes harmonized human functional genomics data from more than 20 sources.
How can I search FILER data?
You can search by tissue/cell type, biosample type, assay, data type, data collection, or by genomic coordinates, or browse datasets and annotations.
Can I download and use FILER data?
Yes. External users may freely download, analyze and publish results based on FILER data, with citation of FILER and the original publications.
Can I install FILER locally?
Yes. The site provides a Deploy option to download and install FILER on a local server or cloud computing instance.
Is something wrong or out of date?
Tell us and an editor will check it.
Own this website?
Claim this listing
Claim the listing and suggest updates yourself. An editor checks every claim first.