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The algebraic phylogenetics database
The algebraic phylogenetics database catalogs algebraic invariants associated with small phylogenetic trees and networks.
About The algebraic phylogenetics database
The algebraic phylogenetics database catalogs algebraic invariants associated with small phylogenetic trees and networks. This is database version 0.3 of April 30, 2026.
Entries are organized by phylogenetic graph and evolutionary model, with fields for dimension, degree, numbers of probability and Fourier coordinates, singular locus dimension and degree, and ML and ED degrees. Data can be downloaded as LaTeX (.yaml) and OSCAR (.mrdi) files.
Key features
- Organizes invariants by phylogenetic graph and evolutionary model
- Lists dimension, degree, ML degree, and ED degree
- Lists probability and Fourier coordinate counts
- Lists singular locus dimension and degree
- Offers LaTeX (.yaml) downloads for entries
- Offers OSCAR (.mrdi) model files for entries
Best for: Researchers studying algebraic invariants of small phylogenetic trees and networks.
Good for
- Covers Cavender-Felsenstein-Neyman, Jukes-Cantor, and Kimura 2- and 3-parameter models
- Provides downloads in LaTeX (.yaml) and OSCAR (.mrdi) formats
- Identifies database version and date as v0.3 of April 30, 2026
Watch out for
- Limited to small phylogenetic trees and networks
- Some table entries show '-' where invariant values are not given
The algebraic phylogenetics database at a glance
- Website
- algebraicphylogenetics.org
- Category
- Research & Data › Open Data & Datasets
- Type
- Website
- Pricing
- Not confirmed. Check the site
- Platforms
- Web
- Open source
- Not stated
- Language
- English
- Last checked
- Oct 5, 2026 · Online when checked
- Listed
- Oct 5, 2026
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The algebraic phylogenetics database FAQ
What version is the database?
Version 0.3 dated April 30, 2026.
What download formats are offered?
LaTeX (.yaml) and OSCAR SmallPhylogeneticModel and SmallGroupBasedModel (.mrdi) files.
Which evolutionary models are listed?
Cavender-Felsenstein-Neyman, Jukes-Cantor, Kimura 2-parameter, and Kimura 3-parameter.
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