1
Also covers datasets and open data · same kind of website
M3G maintains metadata for GNSS network stations, including identifiers, locations, installation dates, data licenses, and site logs.
Alternatives
The Best miRBase Alternatives in 2026
24 alternatives1 free · 0 open source
Looking for something like miRBase? Here are 24 alternatives, ranked by how closely they match it on purpose, features and platforms. Of these, 1 are free or have a free plan.
miRBase archives microRNA sequences and annotations, with searches by identifier, keyword, or genomic location.
Top picks at a glance
First suggestionM3G - Metadata Management and Distribution System for Multiple GNSS NetworksM3G maintains metadata for GNSS network stations, including…Free or freemium optionKasetsart University Knowledge RepositoryKasetsart University's digital repository for creative…Another optionNONCODENONCODE brings together non-coding RNA sequences…
Quick comparison
| # | Alternative | Pricing | Open source | Platforms |
|---|---|---|---|---|
| 1 | M3G - Metadata Management and Distribution System for Multiple GNSS Networks | — | Not stated | Web |
| 2 | NONCODE | — | Not stated | Web |
| 3 | Crustal Dynamics Data Information System | — | Not stated | Web |
| 4 | Mutant Mouse Resource & Research Centers | — | Not stated | Web |
| 5 | Integrated Interactions Database | — | Not stated | Web |
| 6 | UniProtKB/Swiss-Prot | — | Not stated | Web |
| 7 | Korea Sequence Read Archive | — | Not stated | Web |
| 8 | Kasetsart University Knowledge Repository | Free | Not stated | Web |
| 9 | ILC-CNR for CLARIN-IT repository | — | Not stated | Web |
| 10 | Oral Cancer Gene Database | — | Not stated | Web |
All miRBase alternatives
2
NONCODE
noncode.org/index.phpAlso covers datasets and open data · same kind of website
NONCODE brings together non-coding RNA sequences, documentation, annotations, expression, and disease relationships in a knowledge database.
3
Crustal Dynamics Data Information System
cddis.nasa.govAlso covers datasets and open data · same kind of website
CDDIS has migrated to NASA Earthdata; its page directs visitors to the new Earthdata location.
4
Also covers datasets and open data · same kind of website
The MMRRC repository lets users search mouse models by gene or strain name, identifiers, and disease-related terms.
5
Integrated Interactions Database
iid.ophid.utoronto.caAlso covers datasets and open data · same kind of website
The Integrated Interactions Database lets users search interaction data by gene or protein identifiers and organism.
6
UniProtKB/Swiss-Prot
web.expasy.org/docs/swiss-prot_guideline.htmlAlso covers datasets and open data · same kind of website
UniProtKB/Swiss-Prot is the reviewed section of UniProtKB, with manually annotated protein sequences and experimental information.
7
Korea Sequence Read Archive
kbds.re.kr/KRAAlso covers datasets and open data · same kind of website
The Korea Sequence Read Archive stores raw sequencing data and alignment information and offers a cloud-based analysis service.
8
Also covers datasets and open data · same kind of website · free
Kasetsart University's digital repository for creative works by university personnel, searchable by title, author, agency, keyword, DOI and abstract.
9
ILC-CNR for CLARIN-IT repository
dspace-clarin-it.ilc.cnr.itAlso covers datasets and open data · same kind of website
The ILC4CLARIN repository offers linguistic data and NLP tools, with deposit, citation support, and persistent identifiers.
10
Oral Cancer Gene Database
actrec.gov.in/OCDB/index.htmAlso covers datasets and open data · same kind of website
The Oral Cancer Gene Database provides gene lists, keyword search, and interaction network information for head and neck cancer research.
11
PathCards
pathcards.genecards.orgAlso covers datasets and open data · same kind of website
PathCards integrates human biological pathway databases and annotations into unified pathway records.
12
Emage
emouseatlas.org/emageAlso covers datasets and open data · same kind of website
EMAGE provides searchable gene and protein records with filters for specimens, annotations, data sources, assays, and anatomy terms.
13
The Cell Vision
thecellvision.orgAlso covers datasets and open data · same kind of website
TheCellVision presents studies and datasets on cell compartment morphology, protein localization, and image-based annotation.
14
Joint Genome Institute Data Portal
data.jgi.doe.govAlso covers datasets and open data · same kind of website
The Joint Genome Institute Data Portal lets visitors browse and download genomic data.
15
cisRED
cisred.orgAlso covers datasets and open data · same kind of website
Explore CRISPR regulation, epigenetics, genomics, and gene expression research with CISRED.
16
SOL Genomics Network
solgenomics.netAlso covers datasets and open data · same kind of website
The Solanaceae Genomics Network provides plant genomics resources, including a pan-genome project and related tools.
17
MyRiceBase
myricebase.mardi.gov.myAlso covers datasets and open data · same kind of website
MyRiceBase collects rice biology data for quality traits, including searchable and downloadable genomic, transcriptomic, gene, and network information.
18
HAGR
genomics.senescence.infoAlso covers datasets and open data · same kind of website
The Human Ageing Genomic Resources include curated databases on ageing-related genes, dietary restriction, and longevity.
19
Rat Genome Database
rgd.mcw.eduAlso covers datasets and open data · same kind of website
The Rat Genome Database provides integrated genetic, genomic, physiological, pathway, and disease information with research tools.
20
Cancer GenomeAtlas Data Portal
cancer.gov/ccg/research/genome-sequencing/tcgaAlso covers datasets and open data · same kind of website
The Cancer Genome Atlas Program provides access to cancer genomic data from more than 11,000 primary tumor cases.
21
Database of Genomic Variants
dgv.tcag.ca/dgv/app/homeAlso covers datasets and open data · same kind of website
The Database of Genomic Variants is a curated catalog of human structural variation, with browser, download, query, and submission tools.
22
PeanutBase
peanutbase.orgAlso covers datasets and open data · same kind of website
PeanutBase integrates peanut genetic, genomic, and trait data, with gene, trait, sequence, and germplasm tools.
23
Candida Genome Database
candidagenome.orgAlso covers datasets and open data · same kind of website
The Candida Genome Database provides curated genomic, protein, phenotype, literature and sequence information.
24
EMDataResource
emdataresource.orgAlso covers api, datasets, and open data · same kind of website
EMDataResource archives and retrieves three-dimensional electron microscopy structures, with data standards, validation methods, and related tools.
No alternatives match this filter.
Alternatives to similar tools
Rat Genome Database24 alternativesIntegrated Interactions Database24 alternativesMutant Mouse Resource & Research Centers24 alternativesUniProtKB/Swiss-Prot24 alternativesILC-CNR for CLARIN-IT repository24 alternativesEmage24 alternatives
What is the best alternative to miRBase?
Based on features, tags and platforms, the closest alternatives to miRBase are M3G - Metadata Management and Distribution System for Multiple GNSS Networks, NONCODE, and Crustal Dynamics Data Information System.
Is there a free alternative to miRBase?
Yes. Kasetsart University Knowledge Repository is free or offer a free plan.
Alternatives are suggested from the purpose and features described in our listings. Different pages for the same product appear once. Read each description to check whether it fits your task. How we choose alternatives · Suggest an alternative