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Brain Transcriptome Database
BrainTx integrates transcriptome data related to the brain for visualization and analysis.
About Brain Transcriptome Database
The Brain Transcriptome Database (BrainTx) is a web platform for visualizing and analyzing transcriptome data related to the brain. It combines the project's own transcriptome data with publicly accessible transcriptome data on the genetics underlying brain development, function, and dysfunction. BrainTx was developed from the Cerebellar Development Transcriptome Database (CDT-DB), and information about CDT-DB and the experimental data can be downloaded from the Download option in the menu bar.
Users can search by gene name, keyword, or gene ID, and can use AND or OR between words in compound searches. The site also lists spatiotemporal gene expression profiles for brain structures and regions. The homepage reports that in situ hybridization (ISH) images were added in 2020 and that version 5.5 was released on April 1, 2020. The page footer gives the same update date, so the content may not reflect more recent changes. No pricing information is given on the homepage.
Key features
- Integrates original and publicly accessible brain-related transcriptome data
- Gene name and keyword search with compound AND or OR operators
- Gene ID search for looking up specific genes
- Full data search for spatiotemporal gene expression profiles of brain regions
- Brain distribution and brain specificity quick search options
- In situ hybridization (ISH) images added to the database in 2020
Best for: Researchers who want to visualize and analyze gene expression across brain development, function, and regions.
Good for
- Combines the project's own transcriptome data with public transcriptome datasets
- Supports searches by gene name, keyword, and gene ID
- Provides data on spatiotemporal gene expression across brain structures and regions
Watch out for
- The homepage lists its latest update as April 1, 2020
- Pricing is not stated on the homepage
Brain Transcriptome Database at a glance
- Category
- Research & Data › Open Data & Datasets
- Type
- Website
- Pricing
- Not confirmed. Check the site
- Platforms
- Web
- Open source
- Not stated
- Last checked
- Oct 6, 2026 · Online when checked
- Listed
- Oct 5, 2026
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Brain Transcriptome Database FAQ
Can I download the data?
The homepage says information about CDT-DB and the experimental information can be downloaded using the Download option in the menu bar.
Does the search support multiple terms?
Yes. The keyword and gene name search supports compound searches, and users can use AND or OR between words.
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