The Drosophila Synthetic Population Resource provides a population resource for genetic analysis of complex traits.
Human Genetic Variation Repository
HGVD provides a searchable catalog of genetic variants and allele frequencies focused on the Japanese population.
About Human Genetic Variation Repository
The Human Genetic Variation Database (HGVD) is a browsable catalogue of genetic variations and allele frequencies focused on the Japanese population. Users can search by gene name/ID or dbSNP rsID, or view variants by chromosome in GRCh37/hg19, with GRCh38/hg38 and T2T/CHM13 coordinates provided through LiftOver from GRCh37/hg19. The site also notes bulk downloads of genotype count and Cis-eQTL data, and HGVD version 3.0 was released in October 2025. A related paper covering whole-genome sequencing of 3,135 individuals representing Japanese genetic diversity was published in November 2025.
Key features
- Search by gene name/ID or dbSNP rsID
- Browse variants by chromosome in GRCh37/hg19
- View GRCh38/hg38 coordinates via LiftOver from GRCh37/hg19
- View T2T/CHM13 coordinates via LiftOver from GRCh37/hg19
- Bulk download of genotype count data
- Bulk download of Cis-eQTL data
Best for: Researchers studying genetic variation and allele frequencies in the Japanese population.
Good for
- Searchable by gene name/ID or dbSNP rsID
- Supports multiple genome build coordinate views
- Offers bulk downloads of genotype count and Cis-eQTL data
Watch out for
- Focused on the Japanese population
- GRCh38/hg38 and T2T/CHM13 coordinates are LiftOver conversions from GRCh37/hg19
- Commercial licensing was transferred to GenoConcierge Kyoto
Human Genetic Variation Repository at a glance
- Category
- Research & Data › Open Data & Datasets
- Type
- Website
- Pricing
- Not confirmed. Check the site
- Platforms
- Web
- Open source
- Not stated
- Language
- English
- Last checked
- Oct 6, 2026 · Online when checked
- Listed
- Oct 5, 2026
Human Genetic Variation Repository alternatives
Tools and sites you could use instead, ranked by how closely they match.
The Database of Genomic Variants is a curated catalog of human structural variation, with browser, download, query, and submission tools.
The International Genome Sample Resource provides a catalog of human genetic variation from the 1000 Genomes Project.
PSnpBind catalogs protein variants and their effects on protein-ligand binding affinity.
Ostrava’s open data catalog organizes datasets across topics such as transport, culture, population, public services, and the environment.
Venice’s open data catalog organizes city datasets by themes including culture, mobility, population, economy, and the environment.
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Human Genetic Variation Repository FAQ
What population does HGVD focus on?
HGVD provides a browsable catalogue of genetic variations and allele frequencies focused on the Japanese population.
Which genome builds can I view?
The viewer supports chromosomes in GRCh37/hg19, GRCh38/hg38, and T2T/CHM13. GRCh38/hg38 and T2T/CHM13 are provided via LiftOver from GRCh37/hg19.
Can I download data from HGVD?
The site notes availability of bulk download for genotype count data and Cis-eQTL data, and states that HGVD version 2.3 is downloadable.
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